SNP Profiles of NA 168 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	CT	AC	GG	GG	CT	CC	CC	CT	GG	TT	CT	CT
1._GC-01-112-6-09	AA	AA	CT	AC	GG	GG	CT	CC	CC	CT	GG	TT	CT	CT
2._NA_168	AA	AA	CT	AC	_	_	_	_	CC	CT	GG	_	CT	_
3._NA_168	AA	AA	CT	AC	_	_	_	_	CC	CT	GG	_	CT	_
4._NA_168	AA	AA	CT	AC	_	_	_	_	CC	CT	GG	_	CT	_
5._NA_168	AA	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_
6._NA_168	AA	AA	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
7._NA_168	AA	AA	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
8._NA_168	AA	AA	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
9._NA_168	AA	AA	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
10._NA_168	AA	AA	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
11._NA_168	AA	AA	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
12._GC-01-112-6-09	AA	AA	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
13._GC-01-112-6-09	AA	AA	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
14._GC-01-112-6-09	AA	AA	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
15._GC-01-112-6-09	AA	AA	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
16._GC-01-112-6-09	AA	AA	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
17._GC-01-112-6-09	AA	AA	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	AC	AA	GG	GG	CG	GG	CT	AA	TT	GG	AT	AA	CG
1._GC-01-112-6-09	AT	AC	AA	GG	GG	CG	GG	CT	AA	TT	GG	AT	AA	CG
2._NA_168	_	_	_	GG	_	_	GG	_	_	_	_	AT	AA	_
3._NA_168	_	_	_	GG	_	_	GG	_	_	_	_	AT	AA	_
4._NA_168	_	_	_	GG	_	_	GG	_	_	_	_	AT	AA	_
5._NA_168	_	_	_	GG	_	_	GG	_	_	_	_	AT	AA	_
6._NA_168	_	_	_	GG	_	_	GG	_	_	_	_	TT	AT	_
7._NA_168	_	_	_	GG	_	_	GG	_	_	_	_	TT	AT	_
8._NA_168	_	_	_	GG	_	_	GG	_	_	_	_	TT	AT	_
9._NA_168	_	_	_	GG	_	_	GG	_	_	_	_	TT	AT	_
10._NA_168	_	_	_	GG	_	_	GG	_	_	_	_	TT	AT	_
11._NA_168	_	_	_	GG	_	_	GG	_	_	_	_	TT	AT	_
12._GC-01-112-6-09	AA	AA	_	GG	GG	CC	GG	TT	AA	TT	GG	TT	AT	_
13._GC-01-112-6-09	AA	AA	_	GG	GG	CC	GG	TT	AA	TT	GG	TT	AT	CC
14._GC-01-112-6-09	AA	AA	_	GG	GG	CC	GG	TT	AA	TT	GG	TT	AT	CC
15._GC-01-112-6-09	AA	AA	_	GG	GG	CC	GG	TT	AA	TT	GG	TT	AT	CC
16._GC-01-112-6-09	AA	AA	_	GG	GG	CC	GG	TT	AA	TT	GG	TT	AT	CC
17._GC-01-112-6-09	AA	AA	_	GG	GG	CC	GG	TT	AA	TT	GG	TT	AT	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AA	TT	GT	GG	GG	CC	AA	GG	GG	TT	AG	CC	GG
1._GC-01-112-6-09	CG	AA	TT	GT	GG	GG	CC	AA	GG	GG	TT	AG	CC	GG
2._NA_168	CG	AA	_	_	_	GG	_	AA	GG	_	_	AG	_	_
3._NA_168	CG	AA	_	_	_	GG	_	AA	GG	_	_	AG	_	_
4._NA_168	CG	AA	_	_	_	GG	_	AA	GG	_	_	AG	_	_
5._NA_168	GG	AA	_	_	_	GG	_	AG	GG	_	_	AG	_	_
6._NA_168	CC	AT	_	_	_	GG	_	AG	GG	_	_	AA	_	_
7._NA_168	CC	AT	_	_	_	GG	_	AG	GG	_	_	AA	_	_
8._NA_168	CC	AT	_	_	_	GG	_	AG	GG	_	_	AA	_	_
9._NA_168	CC	AT	_	_	_	GG	_	AG	GG	_	_	AA	_	_
10._NA_168	CC	AT	_	_	_	GG	_	AG	GG	_	_	AA	_	_
11._NA_168	CC	AT	_	_	_	GG	_	AG	GG	_	_	AA	_	_
12._GC-01-112-6-09	CC	AT	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG
13._GC-01-112-6-09	CC	AT	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG
14._GC-01-112-6-09	CC	AT	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG
15._GC-01-112-6-09	CC	AT	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG
16._GC-01-112-6-09	CC	AT	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG
17._GC-01-112-6-09	CC	AT	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	GG	TT	TT	AG	GG	AA	CC	CC	GG	GG	GT	TT	CC
1._GC-01-112-6-09	CC	GG	TT	TT	AG	GG	AA	CC	CC	GG	GG	GT	TT	CC
2._NA_168	_	_	_	TT	_	_	_	_	_	_	_	_	_	CC
3._NA_168	_	_	_	TT	_	_	_	_	_	_	_	_	_	CC
4._NA_168	_	_	_	TT	_	_	_	_	_	_	_	_	_	CC
5._NA_168	_	_	_	TT	_	_	_	_	_	_	_	_	_	_
6._NA_168	_	_	_	TT	_	_	_	_	_	_	_	_	_	CC
7._NA_168	_	_	_	TT	_	_	_	_	_	_	_	_	_	CC
8._NA_168	_	_	_	TT	_	_	_	_	_	_	_	_	_	CC
9._NA_168	_	_	_	TT	_	_	_	_	_	_	_	_	_	CC
10._NA_168	_	_	_	TT	_	_	_	_	_	_	_	_	_	CC
11._NA_168	_	_	_	TT	_	_	_	_	_	_	_	_	_	CC
12._GC-01-112-6-09	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GT	TT	CC
13._GC-01-112-6-09	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GT	TT	CC
14._GC-01-112-6-09	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GT	TT	CC
15._GC-01-112-6-09	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GT	TT	CC
16._GC-01-112-6-09	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GT	TT	CC
17._GC-01-112-6-09	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GT	TT	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	GG	CC	TT	AA	GG	GG	AC	AA	GT	GG	AG	CT	CC
1._GC-01-112-6-09	TT	GG	CC	TT	AA	GG	GG	AC	AA	GT	GG	AG	CT	CC
2._NA_168	_	_	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
3._NA_168	_	_	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
4._NA_168	_	_	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
5._NA_168	_	_	_	TT	AC	GG	_	AA	AA	GT	GG	_	_	_
6._NA_168	_	_	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
7._NA_168	_	_	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
8._NA_168	_	_	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
9._NA_168	_	_	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
10._NA_168	_	_	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
11._NA_168	_	_	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
12._GC-01-112-6-09	TT	GG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CG
13._GC-01-112-6-09	TT	GG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CG
14._GC-01-112-6-09	TT	GG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CG
15._GC-01-112-6-09	TT	GG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CG
16._GC-01-112-6-09	TT	GG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CG
17._GC-01-112-6-09	TT	_	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CG

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AA	CT	CC	AG	AC	AC	AG	CC	CC	CC	AT	CC	CC	CT
1._GC-01-112-6-09	AA	CT	CC	AG	AC	AC	AG	CC	CC	CC	AT	CC	CC	CT
2._NA_168	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CC	CT
3._NA_168	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CC	CT
4._NA_168	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CC	CT
5._NA_168	AA	CC	_	_	_	_	_	CC	CC	_	_	_	CC	TT
6._NA_168	AA	CT	_	_	_	_	_	CC	CG	_	_	_	CC	TT
7._NA_168	AA	CT	_	_	_	_	_	CC	CG	_	_	_	CC	TT
8._NA_168	AA	CT	_	_	_	_	_	CC	CG	_	_	_	CC	TT
9._NA_168	AA	CT	_	_	_	_	_	CC	CG	_	_	_	CC	TT
10._NA_168	AA	CT	_	_	_	_	_	CC	CG	_	_	_	CC	TT
11._NA_168	AA	CT	_	_	_	_	_	CC	CG	_	_	_	CC	TT
12._GC-01-112-6-09	AA	CT	AC	AA	CC	AC	AA	CC	CG	CC	AA	AC	CC	TT
13._GC-01-112-6-09	AA	CT	AC	AA	CC	AC	AA	CC	CG	CC	AA	AC	CC	TT
14._GC-01-112-6-09	AA	CT	AC	AA	CC	AC	AA	CC	CG	CC	AA	AC	CC	TT
15._GC-01-112-6-09	AA	CT	AC	AA	CC	AC	AA	CC	CG	CC	AA	AC	CC	TT
16._GC-01-112-6-09	AA	CT	AC	AA	CC	AC	AA	CC	CG	CC	AA	AC	CC	TT
17._GC-01-112-6-09	AA	CT	AC	AA	CC	AC	AA	CC	CG	CC	AA	AC	CC	TT

	85	86	87	88	89	90	91	92	93
_Input profile	CC	TT	AG	CT	CC	GT	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
1._GC-01-112-6-09	CC	TT	AG	CT	CC	GT	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
2._NA_168	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
3._NA_168	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
4._NA_168	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
5._NA_168	_	_	AG	_	CC	_	_	_	_	X_X	X_X	X_X	X_X	X_X
6._NA_168	CC	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
7._NA_168	CC	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
8._NA_168	CC	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
9._NA_168	CC	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
10._NA_168	CC	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
11._NA_168	CC	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
12._GC-01-112-6-09	CC	TT	AG	CC	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
13._GC-01-112-6-09	CC	TT	AG	CC	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
14._GC-01-112-6-09	CC	TT	AG	CC	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
15._GC-01-112-6-09	CC	TT	AG	CC	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
16._GC-01-112-6-09	CC	TT	AG	CC	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
17._GC-01-112-6-09	CC	TT	AG	CC	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X

Input profile: NA_168 GC-01-112-6-09

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

1._NA_168 GC-01-112-6-09

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

2._NA_168

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

3._NA_168

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._NA_168

identical
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 435

Dapeng Zhang, 2016

5._NA_168

85.3 %
34 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B F493 T5

Dapeng Zhang, 2016

6._NA_168

80.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 4 > FP

Dapeng Zhang, 2016

7._NA_168

80.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 10

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._NA_168

80.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 12

Dapeng Zhang, 2016

9._NA_168

80.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 1 > FP

Dapeng Zhang, 2016

10._NA_168

80.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 3 > FP

Dapeng Zhang, 2016

11._NA_168

80.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 6 > FP

Dapeng Zhang, 2016

12._NA_168 GC-01-112-6-09

80.2 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

13._NA_168 GC-01-112-6-09

79.9 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

14._NA_168 GC-01-112-6-09

79.9 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

15._NA_168 GC-01-112-6-09

79.9 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

16._NA_168 GC-01-112-6-09

79.9 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

17._NA_168 GC-01-112-6-09

79.7 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP1309
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240